Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM1O00151 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.27□□□□□ -0.13
PDLIM1O00151 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 AC106028.4-201ENST00000614509 607 ntBASIC14.27□□□□□ -0.13
PDLIM1O00151 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM1O00151 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
PDLIM1O00151 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PDLIM1O00151 DNM1P41-201ENST00000623634 3350 ntBASIC14.27□□□□□ -0.13
PDLIM1O00151 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM1O00151 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM1O00151 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
PDLIM1O00151 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 AC107890.1-201ENST00000422478 521 ntBASIC14.26□□□□□ -0.13
PDLIM1O00151 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.26□□□□□ -0.13
PDLIM1O00151 TPT1P11-201ENST00000458482 498 ntBASIC14.26□□□□□ -0.13
PDLIM1O00151 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.26□□□□□ -0.13
PDLIM1O00151 AC105021.1-202ENST00000570572 669 ntBASIC14.26□□□□□ -0.13
PDLIM1O00151 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 AL133215.2-201ENST00000609242 977 ntBASIC14.26□□□□□ -0.13
PDLIM1O00151 AC003101.2-201ENST00000612557 442 ntBASIC14.26□□□□□ -0.13
PDLIM1O00151 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
PDLIM1O00151 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.26□□□□□ -0.13
PDLIM1O00151 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
PDLIM1O00151 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM1O00151 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
PDLIM1O00151 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM1O00151 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
PDLIM1O00151 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.25□□□□□ -0.13
PDLIM1O00151 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.25□□□□□ -0.13
PDLIM1O00151 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.25□□□□□ -0.13
PDLIM1O00151 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
PDLIM1O00151 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
PDLIM1O00151 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms