Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC006453.4-201ENST00000636949 1252 ntBASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AL136172.1-201ENST00000598590 1394 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC092135.3-201ENST00000624151 1846 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC006001.1-201ENST00000325130 474 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 CD8B2-202ENST00000417670 633 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 FAM8A4P-201ENST00000435433 1213 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 GCOM2-201ENST00000509133 1104 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AP003171.2-201ENST00000528208 925 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AP000812.2-201ENST00000538934 718 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 OR10B1P-201ENST00000601666 907 ntBASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ATG4BQ9Y4P1 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.08□□□□□ -0.15
ATG4BQ9Y4P1 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
ATG4BQ9Y4P1 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
ATG4BQ9Y4P1 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ATG4BQ9Y4P1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms