Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TDH-203ENST00000531764 1110 ntBASIC14.53□□□□□ -0.08
VPS4AQ9UN37 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AC140479.7-201ENST00000636301 2332 ntBASIC14.53□□□□□ -0.08
VPS4AQ9UN37 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS4AQ9UN37 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS4AQ9UN37 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 CSF2RBP1-201ENST00000447905 391 ntBASIC14.52□□□□□ -0.09
VPS4AQ9UN37 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 FO681548.1-201ENST00000455617 1132 ntBASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC243960.2-201ENST00000600996 747 ntBASIC14.52□□□□□ -0.09
VPS4AQ9UN37 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS4AQ9UN37 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 AC097359.2-201ENST00000604992 2389 ntBASIC14.51□□□□□ -0.09
VPS4AQ9UN37 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
VPS4AQ9UN37 AC099336.1-201ENST00000417053 1171 ntBASIC14.51□□□□□ -0.09
VPS4AQ9UN37 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms