Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 MROH4P-201ENST00000431302 1578 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 AL008707.1-201ENST00000422498 534 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 NKAIN1P1-201ENST00000435754 582 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 TUBB8P8-201ENST00000458717 1058 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 ALG3P1-201ENST00000508806 1114 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 MIR4683-201ENST00000579659 81 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 MIR3619-201ENST00000579667 83 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 AC005324.6-201ENST00000587972 613 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 AC009955.4-201ENST00000597192 544 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 BNIP3P13-201ENST00000599968 566 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 AC002472.3-201ENST00000640124 621 ntBASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAIPQ9BWF2 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 DPM3-202ENST00000368399 517 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TLE1P1-201ENST00000422965 589 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 HIST2H2BC-201ENST00000498492 580 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AC044849.1-201ENST00000519737 1188 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ACTG1P17-201ENST00000558391 1119 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MIR4783-201ENST00000580343 82 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AC106872.11-201ENST00000605838 421 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AC084346.2-201ENST00000607097 949 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AC138649.2-201ENST00000615886 705 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AL162426.1-201ENST00000624141 743 ntBASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRAIPQ9BWF2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 INE2-201ENST00000630399 1874 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms