Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AC117489.1-201ENST00000625169 3217 ntBASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 MRPL37P1-201ENST00000592451 1337 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 KRT18P36-201ENST00000411618 1276 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 LDHBP1-201ENST00000455730 1119 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 AC090505.1-201ENST00000430515 1834 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 RPS2P36-201ENST00000456516 831 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 KRT8P13-201ENST00000463294 1010 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 AGGF1P1-201ENST00000509500 2073 ntBASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.11■□□□□ 0.01
SHROOM3Q8TF72 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 AC079328.1-201ENST00000560358 952 ntBASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 AC016629.1-201ENST00000596579 586 ntBASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SHROOM3Q8TF72 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms