Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC008026.2-201ENST00000495438 348 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 APOC1-209ENST00000592885 562 ntTSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC008972.2-201ENST00000606587 494 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 TEKT4P2-202ENST00000559466 1312 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 AC020931.1-201ENST00000589622 1346 ntBASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMC1BQ8NDV3 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 AL157414.3-201ENST00000624276 1954 ntBASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 BPIFB5P-201ENST00000457066 1099 ntBASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 FBXO36P1-201ENST00000579006 471 ntBASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMC1BQ8NDV3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 AL136172.1-201ENST00000598590 1394 ntBASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 CELP-201ENST00000411440 1249 ntTSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms