Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
MRE11P49959 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
MRE11P49959 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
MRE11P49959 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MRE11P49959 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC17.47■□□□□ 0.39
MRE11P49959 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC17.47■□□□□ 0.39
MRE11P49959 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MRE11P49959 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
MRE11P49959 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 AC007787.1-201ENST00000588095 1583 ntBASIC17.46■□□□□ 0.39
MRE11P49959 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 AC012508.2-201ENST00000567613 1472 ntBASIC17.46■□□□□ 0.39
MRE11P49959 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.46■□□□□ 0.39
MRE11P49959 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.46■□□□□ 0.39
MRE11P49959 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.46■□□□□ 0.39
MRE11P49959 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 ACTL9-202ENST00000612068 1252 ntBASIC17.46■□□□□ 0.39
MRE11P49959 AL162274.1-201ENST00000617191 1098 ntBASIC17.46■□□□□ 0.39
MRE11P49959 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
MRE11P49959 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
MRE11P49959 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
MRE11P49959 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
MRE11P49959 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MRE11P49959 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
MRE11P49959 CROT-203ENST00000419147 2959 ntTSL 2 BASIC17.46■□□□□ 0.38
MRE11P49959 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC17.46■□□□□ 0.38
MRE11P49959 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.46■□□□□ 0.38
MRE11P49959 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
MRE11P49959 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 AC007326.2-201ENST00000624224 7579 ntBASIC17.45■□□□□ 0.38
MRE11P49959 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 FAM86MP-201ENST00000340703 885 ntBASIC17.45■□□□□ 0.38
MRE11P49959 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
MRE11P49959 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
MRE11P49959 ADH5P3-201ENST00000433842 1137 ntBASIC17.45■□□□□ 0.38
MRE11P49959 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.45■□□□□ 0.38
MRE11P49959 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.45■□□□□ 0.38
MRE11P49959 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.45■□□□□ 0.38
MRE11P49959 HNRNPUP1-201ENST00000554987 333 ntBASIC17.45■□□□□ 0.38
MRE11P49959 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MRE11P49959 AC026120.1-201ENST00000611536 926 ntBASIC17.45■□□□□ 0.38
MRE11P49959 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms