Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.43■□□□□ 0.06
PTPN9P43378 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.43■□□□□ 0.06
PTPN9P43378 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.43■□□□□ 0.06
PTPN9P43378 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.43■□□□□ 0.06
PTPN9P43378 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.43■□□□□ 0.06
PTPN9P43378 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 KRT8P4-201ENST00000509735 1454 ntBASIC15.43■□□□□ 0.06
PTPN9P43378 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
PTPN9P43378 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PTPN9P43378 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.43■□□□□ 0.06
PTPN9P43378 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 AC010141.1-201ENST00000411585 623 ntBASIC15.42■□□□□ 0.06
PTPN9P43378 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 HOMER2P2-201ENST00000451621 847 ntBASIC15.42■□□□□ 0.06
PTPN9P43378 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.42■□□□□ 0.06
PTPN9P43378 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 MIR6775-201ENST00000617557 69 ntBASIC15.42■□□□□ 0.06
PTPN9P43378 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
PTPN9P43378 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.42■□□□□ 0.06
PTPN9P43378 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PTPN9P43378 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PTPN9P43378 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN9P43378 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.41■□□□□ 0.06
PTPN9P43378 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 AC006504.5-208ENST00000588784 2401 ntBASIC15.41■□□□□ 0.06
PTPN9P43378 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PTPN9P43378 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.41■□□□□ 0.06
PTPN9P43378 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms