Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC005252.3-201ENST00000623855 2258 ntBASIC13.69□□□□□ -0.22
RFC3P40938 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RFC3P40938 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
RFC3P40938 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
RFC3P40938 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RFC3P40938 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RFC3P40938 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 AL365209.1-201ENST00000624418 6473 ntBASIC13.68□□□□□ -0.22
RFC3P40938 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.68□□□□□ -0.22
RFC3P40938 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.68□□□□□ -0.22
RFC3P40938 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
RFC3P40938 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 AC079178.1-201ENST00000420915 656 ntBASIC13.68□□□□□ -0.22
RFC3P40938 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.68□□□□□ -0.22
RFC3P40938 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.68□□□□□ -0.22
RFC3P40938 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.68□□□□□ -0.22
RFC3P40938 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 HSPB1P2-201ENST00000448722 546 ntBASIC13.68□□□□□ -0.22
RFC3P40938 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 KRT8P13-201ENST00000463294 1010 ntBASIC13.68□□□□□ -0.22
RFC3P40938 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 AC005730.2-201ENST00000564549 1184 ntBASIC13.68□□□□□ -0.22
RFC3P40938 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.68□□□□□ -0.22
RFC3P40938 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.68□□□□□ -0.22
RFC3P40938 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 ZACNP1-201ENST00000612259 710 ntBASIC13.68□□□□□ -0.22
RFC3P40938 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.68□□□□□ -0.22
RFC3P40938 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 AC009093.2-202ENST00000620513 2079 ntBASIC13.68□□□□□ -0.22
RFC3P40938 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RFC3P40938 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.68□□□□□ -0.22
RFC3P40938 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
RFC3P40938 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RFC3P40938 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms