Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 FGD5P1-202ENST00000614866 2498 ntBASIC13.69□□□□□ -0.22
MSX1P28360 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
MSX1P28360 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
MSX1P28360 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
MSX1P28360 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 FAM86HP-204ENST00000513466 959 ntBASIC13.68□□□□□ -0.22
MSX1P28360 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 C2orf69P2-201ENST00000562032 1123 ntBASIC13.68□□□□□ -0.22
MSX1P28360 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.68□□□□□ -0.22
MSX1P28360 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.68□□□□□ -0.22
MSX1P28360 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 AC006453.4-201ENST00000636949 1252 ntBASIC13.68□□□□□ -0.22
MSX1P28360 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 AC018442.1-201ENST00000421439 2061 ntBASIC13.68□□□□□ -0.22
MSX1P28360 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 OR2I1P-210ENST00000642037 4691 ntBASIC13.68□□□□□ -0.22
MSX1P28360 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX1P28360 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.68□□□□□ -0.22
MSX1P28360 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX1P28360 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX1P28360 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 CLUHP2-201ENST00000426660 1303 ntBASIC13.67□□□□□ -0.22
MSX1P28360 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX1P28360 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 AC006001.1-201ENST00000325130 474 ntBASIC13.67□□□□□ -0.22
MSX1P28360 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms