Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
TNFP01375 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.47□□□□□ -0.09
TNFP01375 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.47□□□□□ -0.09
TNFP01375 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.47□□□□□ -0.09
TNFP01375 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.47□□□□□ -0.09
TNFP01375 SCARNA21-201ENST00000517026 139 ntBASIC14.47□□□□□ -0.09
TNFP01375 AL160314.3-201ENST00000556041 767 ntBASIC14.47□□□□□ -0.09
TNFP01375 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.47□□□□□ -0.09
TNFP01375 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC14.47□□□□□ -0.09
TNFP01375 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.47□□□□□ -0.09
TNFP01375 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.47□□□□□ -0.09
TNFP01375 NAP1L6-202ENST00000641404 1222 ntBASIC14.47□□□□□ -0.09
TNFP01375 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.47□□□□□ -0.09
TNFP01375 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
TNFP01375 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
TNFP01375 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TNFP01375 AC091951.1-201ENST00000512854 2465 ntBASIC14.47□□□□□ -0.09
TNFP01375 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.46□□□□□ -0.09
TNFP01375 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 AGAP7P-201ENST00000582299 2062 ntBASIC14.46□□□□□ -0.09
TNFP01375 AGAP14-201ENST00000624701 2060 ntBASIC14.46□□□□□ -0.09
TNFP01375 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
TNFP01375 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.46□□□□□ -0.09
TNFP01375 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.46□□□□□ -0.09
TNFP01375 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.46□□□□□ -0.09
TNFP01375 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.46□□□□□ -0.09
TNFP01375 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.46□□□□□ -0.09
TNFP01375 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.46□□□□□ -0.09
TNFP01375 AC009779.1-201ENST00000551138 283 ntBASIC14.46□□□□□ -0.09
TNFP01375 RBM8B-201ENST00000555532 525 ntBASIC14.46□□□□□ -0.09
TNFP01375 RHOQP1-201ENST00000555758 579 ntBASIC14.46□□□□□ -0.09
TNFP01375 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.46□□□□□ -0.09
TNFP01375 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.46□□□□□ -0.09
TNFP01375 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.46□□□□□ -0.09
TNFP01375 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
TNFP01375 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.46□□□□□ -0.09
TNFP01375 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
TNFP01375 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 AC011270.2-201ENST00000624293 2550 ntBASIC14.46□□□□□ -0.09
TNFP01375 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.46□□□□□ -0.09
TNFP01375 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TNFP01375 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.46□□□□□ -0.09
TNFP01375 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 AC013268.4-201ENST00000637413 2228 ntBASIC14.46□□□□□ -0.1
TNFP01375 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.46□□□□□ -0.1
TNFP01375 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.46□□□□□ -0.1
TNFP01375 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.46□□□□□ -0.1
TNFP01375 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
TNFP01375 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 CICP23-201ENST00000605013 2741 ntBASIC14.45□□□□□ -0.1
TNFP01375 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.45□□□□□ -0.1
TNFP01375 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.45□□□□□ -0.1
TNFP01375 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TNFP01375 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.45□□□□□ -0.1
TNFP01375 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms