Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HMGB3O15347 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 TCAF1P1-201ENST00000414990 2232 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 CEP170-203ENST00000366543 6727 ntTSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 RPS2P28-201ENST00000314255 741 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 RHOQP3-201ENST00000437982 621 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.05□□□□□ -0.48
HMGB3O15347 AC018712.1-201ENST00000455767 687 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 AC105233.2-201ENST00000523697 349 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 AF228730.5-201ENST00000530288 346 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.05□□□□□ -0.48
HMGB3O15347 AC073389.1-201ENST00000595595 795 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 AC148477.8-201ENST00000624298 468 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 AJ239328.1-201ENST00000626237 4807 ntTSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 ERCC5-201ENST00000355739 5082 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 REXO1L4P-201ENST00000605109 1937 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.05□□□□□ -0.48
HMGB3O15347 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HMGB3O15347 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 BCAR1-209ENST00000546196 1340 ntBASIC12.05□□□□□ -0.48
HMGB3O15347 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.05□□□□□ -0.48
HMGB3O15347 SH3RF2-206ENST00000511217 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HMGB3O15347 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 DOCK6-201ENST00000294618 6358 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 RBM20-201ENST00000369519 7233 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.04□□□□□ -0.48
HMGB3O15347 AF186996.4-201ENST00000467186 377 ntBASIC12.04□□□□□ -0.48
HMGB3O15347 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC12.04□□□□□ -0.48
HMGB3O15347 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 UNC93B6-202ENST00000528242 690 ntBASIC12.04□□□□□ -0.48
HMGB3O15347 TOLLIP-AS1-201ENST00000530897 939 ntBASIC12.04□□□□□ -0.48
HMGB3O15347 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.04□□□□□ -0.48
HMGB3O15347 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.04□□□□□ -0.48
HMGB3O15347 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
HMGB3O15347 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HMGB3O15347 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.04□□□□□ -0.48
HMGB3O15347 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.03□□□□□ -0.48
HMGB3O15347 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HMGB3O15347 ATP8B2-202ENST00000368489 5861 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms