Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC022447.6-201ENST00000515522 438 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC022616.1-201ENST00000518688 554 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 TPRX2P-201ENST00000535362 881 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 DUX4L47-201ENST00000566374 394 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 BRI3BPP1-201ENST00000594224 787 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC099568.2-201ENST00000609194 695 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC138649.4-201ENST00000612222 287 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AC093028.1-201ENST00000622998 982 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 AL137783.1-201ENST00000623494 1896 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 CR383656.2-201ENST00000548656 2254 ntBASIC13.08□□□□□ -0.32
CCDC54Q8NEL0 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AL662799.1-202ENST00000614205 422 ntBASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 HSPA7-201ENST00000445535 1927 ntBASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 USP47-202ENST00000339865 7775 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.07□□□□□ -0.32
CCDC54Q8NEL0 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms