Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 MROH4P-201ENST00000431302 1578 ntBASIC19.79■□□□□ 0.76
NPHP3Q7Z494 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP3Q7Z494 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 RN7SL582P-201ENST00000491078 279 ntBASIC19.78■□□□□ 0.76
NPHP3Q7Z494 AC106047.2-201ENST00000511723 743 ntBASIC19.78■□□□□ 0.76
NPHP3Q7Z494 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 USB1-205ENST00000561743 1135 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP3Q7Z494 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 HNRNPA1P58-201ENST00000403629 610 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 MIR1301-201ENST00000408518 82 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 OR51A9P-201ENST00000422578 911 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 KRT18P46-201ENST00000435568 1279 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 AC063952.3-201ENST00000467756 308 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ABHD17AP9-201ENST00000561925 548 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 CYP4F36P-201ENST00000589193 186 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 BRD7P5-201ENST00000299197 1822 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 SSR4P1-203ENST00000599569 2260 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP3Q7Z494 AC087481.3-201ENST00000602886 1894 ntBASIC19.77■□□□□ 0.76
NPHP3Q7Z494 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
NPHP3Q7Z494 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 RNVU1-8-201ENST00000364272 125 ntBASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC19.76■□□□□ 0.75
NPHP3Q7Z494 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms