Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.15□□□□□ -0.14
LIM2P55344 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
LIM2P55344 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.15□□□□□ -0.14
LIM2P55344 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LIM2P55344 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.15□□□□□ -0.14
LIM2P55344 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 AL354989.2-201ENST00000435838 1540 ntBASIC14.15□□□□□ -0.14
LIM2P55344 AC011840.2-201ENST00000563063 1520 ntBASIC14.15□□□□□ -0.14
LIM2P55344 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 INE2-201ENST00000630399 1874 ntBASIC14.14□□□□□ -0.15
LIM2P55344 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.14□□□□□ -0.15
LIM2P55344 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 AC027601.5-201ENST00000624065 2482 ntBASIC14.14□□□□□ -0.15
LIM2P55344 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 ANKRD19P-201ENST00000338192 862 ntBASIC14.14□□□□□ -0.15
LIM2P55344 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
LIM2P55344 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 FAM8A4P-201ENST00000435433 1213 ntBASIC14.14□□□□□ -0.15
LIM2P55344 AL391280.1-201ENST00000506969 1062 ntBASIC14.14□□□□□ -0.15
LIM2P55344 SNX29P1-201ENST00000548357 1007 ntBASIC14.14□□□□□ -0.15
LIM2P55344 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.14□□□□□ -0.15
LIM2P55344 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.14□□□□□ -0.15
LIM2P55344 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.14□□□□□ -0.15
LIM2P55344 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.14□□□□□ -0.15
LIM2P55344 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.14□□□□□ -0.15
LIM2P55344 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 AC020910.5-201ENST00000623668 1865 ntBASIC14.14□□□□□ -0.15
LIM2P55344 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
LIM2P55344 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LIM2P55344 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LIM2P55344 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
LIM2P55344 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.13□□□□□ -0.15
LIM2P55344 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.13□□□□□ -0.15
LIM2P55344 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.13□□□□□ -0.15
LIM2P55344 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 AC104989.1-201ENST00000519711 778 ntBASIC14.13□□□□□ -0.15
LIM2P55344 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms