Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 MIR1301-201ENST00000408518 82 ntBASIC17.32■□□□□ 0.36
COL4A5P29400 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A5P29400 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A5P29400 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL4A5P29400 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A5P29400 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A5P29400 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A5P29400 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A5P29400 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 ODCP-201ENST00000459650 1639 ntBASIC17.31■□□□□ 0.36
COL4A5P29400 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 KRT8P18-201ENST00000413425 1445 ntBASIC17.31■□□□□ 0.36
COL4A5P29400 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL4A5P29400 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL4A5P29400 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A5P29400 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A5P29400 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A5P29400 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 VENTXP3-201ENST00000546480 773 ntBASIC17.31■□□□□ 0.36
COL4A5P29400 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A5P29400 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A5P29400 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL4A5P29400 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A5P29400 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A5P29400 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A5P29400 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A5P29400 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A5P29400 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
COL4A5P29400 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
COL4A5P29400 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
COL4A5P29400 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A5P29400 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL4A5P29400 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.3■□□□□ 0.36
COL4A5P29400 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A5P29400 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A5P29400 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 MAX-218ENST00000557746 571 ntTSL 4 BASIC17.29■□□□□ 0.36
COL4A5P29400 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A5P29400 AC021016.3-201ENST00000608367 477 ntBASIC17.29■□□□□ 0.36
COL4A5P29400 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC17.29■□□□□ 0.36
COL4A5P29400 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A5P29400 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL4A5P29400 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A5P29400 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms