Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC093525.8-201ENST00000624099 1342 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AL353779.1-201ENST00000434793 351 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 SPTLC1P1-201ENST00000447199 261 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 TMPRSS11CP-201ENST00000453277 683 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC023310.3-201ENST00000557027 670 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC100756.1-201ENST00000562736 682 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC138749.3-201ENST00000567691 622 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC239800.4-201ENST00000603712 296 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 RNA5-8SN1-201ENST00000610460 153 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC116165.1-201ENST00000611806 668 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 RNA5-8SN5-202ENST00000612463 153 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 RNA5-8SN4-201ENST00000613359 153 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 RNA5-8SN5-201ENST00000619471 153 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AL354702.1-201ENST00000442006 1960 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC015802.1-201ENST00000588104 1449 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC11.43□□□□□ -0.58
HLA-DMBP28068 AC136759.1-202ENST00000530858 2194 ntBASIC11.43□□□□□ -0.58
HLA-DMBP28068 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
HLA-DMBP28068 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC152010.1-201ENST00000415779 2006 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 C1R-201ENST00000535233 2211 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 OSM-203ENST00000403463 464 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC005034.1-201ENST00000426657 489 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 COQ6-210ENST00000554920 649 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC036164.1-201ENST00000570544 333 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AL662799.1-202ENST00000614205 422 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 AL358472.5-202ENST00000641448 1267 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms