Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC14.97□□□□□ -0.01
VCANP13611 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.97□□□□□ -0.01
VCANP13611 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
VCANP13611 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
VCANP13611 HNRNPA1P59-201ENST00000430583 918 ntBASIC14.97□□□□□ -0.01
VCANP13611 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.97□□□□□ -0.01
VCANP13611 GGNBP1-204ENST00000613113 887 ntBASIC14.97□□□□□ -0.01
VCANP13611 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
VCANP13611 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 OR2A1-AS1-203ENST00000468575 568 ntBASIC14.96□□□□□ -0.01
VCANP13611 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.96□□□□□ -0.01
VCANP13611 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 AC087203.1-201ENST00000532111 1181 ntBASIC14.96□□□□□ -0.01
VCANP13611 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 AC079414.2-201ENST00000567157 1104 ntBASIC14.96□□□□□ -0.01
VCANP13611 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 AL136172.1-201ENST00000598590 1394 ntBASIC14.96□□□□□ -0.01
VCANP13611 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.96□□□□□ -0.01
VCANP13611 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.96□□□□□ -0.01
VCANP13611 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 MIR181D-201ENST00000384853 137 ntBASIC14.96□□□□□ -0.01
VCANP13611 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC14.96□□□□□ -0.01
VCANP13611 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 AC002511.3-201ENST00000638098 420 ntBASIC14.96□□□□□ -0.01
VCANP13611 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.96□□□□□ -0.01
VCANP13611 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.96□□□□□ -0.01
VCANP13611 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VCANP13611 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
VCANP13611 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
VCANP13611 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC14.96□□□□□ -0.02
VCANP13611 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.96□□□□□ -0.02
VCANP13611 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC14.96□□□□□ -0.02
VCANP13611 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
VCANP13611 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
VCANP13611 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.96□□□□□ -0.02
VCANP13611 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VCANP13611 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 AL591122.2-201ENST00000624125 1853 ntBASIC14.95□□□□□ -0.02
VCANP13611 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 AL391005.1-201ENST00000623953 2435 ntBASIC14.95□□□□□ -0.02
VCANP13611 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 SIRPB3P-201ENST00000340424 1216 ntBASIC14.95□□□□□ -0.02
VCANP13611 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 ACY3-202ENST00000529256 933 ntTSL 3 BASIC14.95□□□□□ -0.02
VCANP13611 AC067931.2-201ENST00000623655 2003 ntBASIC14.95□□□□□ -0.02
VCANP13611 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
VCANP13611 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VCANP13611 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.95□□□□□ -0.02
VCANP13611 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.95□□□□□ -0.02
VCANP13611 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.95□□□□□ -0.02
VCANP13611 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VCANP13611 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.95□□□□□ -0.02
VCANP13611 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC14.94□□□□□ -0.02
VCANP13611 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.94□□□□□ -0.02
VCANP13611 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VCANP13611 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.94□□□□□ -0.02
VCANP13611 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms