Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KHSRPP1-201ENST00000427983 1768 ntBASIC16.64■□□□□ 0.25
MSH4O15457 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 KRT8P29-201ENST00000420409 1371 ntBASIC16.64■□□□□ 0.25
MSH4O15457 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 AL390755.1-201ENST00000623716 2027 ntBASIC16.63■□□□□ 0.25
MSH4O15457 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
MSH4O15457 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 AL035414.1-201ENST00000451327 857 ntBASIC16.63■□□□□ 0.25
MSH4O15457 AC021723.1-201ENST00000486306 515 ntBASIC16.63■□□□□ 0.25
MSH4O15457 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.63■□□□□ 0.25
MSH4O15457 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.63■□□□□ 0.25
MSH4O15457 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.63■□□□□ 0.25
MSH4O15457 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 MIR6720-201ENST00000611664 98 ntBASIC16.63■□□□□ 0.25
MSH4O15457 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 NORAD-201ENST00000565493 5339 ntBASIC16.63■□□□□ 0.25
MSH4O15457 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH4O15457 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSH4O15457 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MSH4O15457 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
MSH4O15457 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
MSH4O15457 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.62■□□□□ 0.25
MSH4O15457 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
MSH4O15457 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
MSH4O15457 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
MSH4O15457 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.62■□□□□ 0.25
MSH4O15457 AL157407.1-201ENST00000435784 904 ntBASIC16.62■□□□□ 0.25
MSH4O15457 AL645933.1-201ENST00000440087 609 ntBASIC16.62■□□□□ 0.25
MSH4O15457 AC004898.1-201ENST00000451057 766 ntBASIC16.62■□□□□ 0.25
MSH4O15457 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.62■□□□□ 0.25
MSH4O15457 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 AC126915.1-201ENST00000522847 1038 ntBASIC16.62■□□□□ 0.25
MSH4O15457 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.62■□□□□ 0.25
MSH4O15457 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.62■□□□□ 0.25
MSH4O15457 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 AC005324.6-201ENST00000587972 613 ntBASIC16.62■□□□□ 0.25
MSH4O15457 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
MSH4O15457 BNIP3P13-201ENST00000599968 566 ntBASIC16.62■□□□□ 0.25
MSH4O15457 AL023803.2-201ENST00000620080 638 ntBASIC16.62■□□□□ 0.25
MSH4O15457 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
MSH4O15457 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.62■□□□□ 0.25
MSH4O15457 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
MSH4O15457 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSH4O15457 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms