Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK1Q9Y566 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 AL138724.1-201ENST00000606771 1088 ntBASIC20.78■□□□□ 0.92
SHANK1Q9Y566 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK1Q9Y566 AC099791.2-201ENST00000605725 427 ntBASIC20.78■□□□□ 0.92
SHANK1Q9Y566 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK1Q9Y566 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK1Q9Y566 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK1Q9Y566 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK1Q9Y566 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.76■□□□□ 0.91
SHANK1Q9Y566 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK1Q9Y566 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 AC092437.1-201ENST00000624794 1048 ntBASIC20.75■□□□□ 0.91
SHANK1Q9Y566 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK1Q9Y566 ERN1-208ENST00000606895 2068 ntBASIC20.74■□□□□ 0.91
SHANK1Q9Y566 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK1Q9Y566 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 AC022517.1-201ENST00000592429 346 ntBASIC20.73■□□□□ 0.91
SHANK1Q9Y566 AL031602.1-201ENST00000633169 911 ntBASIC20.73■□□□□ 0.91
SHANK1Q9Y566 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 AC131274.2-201ENST00000580697 1507 ntBASIC20.73■□□□□ 0.91
SHANK1Q9Y566 C17orf82-201ENST00000623772 1530 ntBASIC20.73■□□□□ 0.91
SHANK1Q9Y566 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 KRT18P5-201ENST00000436075 1291 ntBASIC20.73■□□□□ 0.91
SHANK1Q9Y566 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.73■□□□□ 0.91
SHANK1Q9Y566 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SHANK1Q9Y566 AC091060.1-201ENST00000623524 1766 ntBASIC20.71■□□□□ 0.91
SHANK1Q9Y566 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK1Q9Y566 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK1Q9Y566 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK1Q9Y566 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK1Q9Y566 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms