Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.07■■■□□ 2.08
ZC3H4Q9UPT8 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
ZC3H4Q9UPT8 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.05■■■□□ 2.08
ZC3H4Q9UPT8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
ZC3H4Q9UPT8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC28.05■■■□□ 2.08
ZC3H4Q9UPT8 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
ZC3H4Q9UPT8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 ESRRAP2-201ENST00000418437 1549 ntBASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
ZC3H4Q9UPT8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 ABHD17AP1-201ENST00000358206 933 ntBASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
ZC3H4Q9UPT8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 AC126544.1-201ENST00000580842 1059 ntBASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
ZC3H4Q9UPT8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 MIR3181-201ENST00000578512 73 ntBASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 TSPY26P-201ENST00000476365 1326 ntBASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
ZC3H4Q9UPT8 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 CCDC92B-201ENST00000575506 885 ntBASIC28■■■□□ 2.07
ZC3H4Q9UPT8 NTF6G-201ENST00000591094 616 ntBASIC28■■■□□ 2.07
ZC3H4Q9UPT8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
ZC3H4Q9UPT8 EMC9-206ENST00000560403 872 ntTSL 2 BASIC27.99■■■□□ 2.07
ZC3H4Q9UPT8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
ZC3H4Q9UPT8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
ZC3H4Q9UPT8 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
ZC3H4Q9UPT8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 AC006455.2-201ENST00000429931 906 ntBASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 AL354811.1-201ENST00000610286 706 ntBASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
ZC3H4Q9UPT8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 AC009086.3-201ENST00000623486 1008 ntBASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
ZC3H4Q9UPT8 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 AC012414.1-201ENST00000556676 535 ntBASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC27.95■■■□□ 2.07
ZC3H4Q9UPT8 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
ZC3H4Q9UPT8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.94■■■□□ 2.06
ZC3H4Q9UPT8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
ZC3H4Q9UPT8 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
ZC3H4Q9UPT8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
ZC3H4Q9UPT8 MIR572-201ENST00000384983 95 ntBASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 TERF1P2-201ENST00000583350 1212 ntBASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
ZC3H4Q9UPT8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 KRT18P14-201ENST00000534205 1250 ntBASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.92■■■□□ 2.06
ZC3H4Q9UPT8 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.91■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms