Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
UBQLN4Q9NRR5 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 ALDH1A3-203ENST00000557963 1670 ntBASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 SNX5-217ENST00000606557 1087 ntBASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
UBQLN4Q9NRR5 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.02■□□□□ 0.96
UBQLN4Q9NRR5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
UBQLN4Q9NRR5 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.02■□□□□ 0.96
UBQLN4Q9NRR5 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.02■□□□□ 0.96
UBQLN4Q9NRR5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
UBQLN4Q9NRR5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
UBQLN4Q9NRR5 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.02■□□□□ 0.95
UBQLN4Q9NRR5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 AC239859.2-201ENST00000444165 318 ntBASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.01■□□□□ 0.95
UBQLN4Q9NRR5 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
UBQLN4Q9NRR5 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 MIR4787-201ENST00000607364 84 ntBASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 AC092028.1-203ENST00000608262 953 ntBASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
UBQLN4Q9NRR5 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
UBQLN4Q9NRR5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBQLN4Q9NRR5 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 MIR6722-201ENST00000617286 78 ntBASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 AL035685.1-201ENST00000636663 812 ntBASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBQLN4Q9NRR5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
UBQLN4Q9NRR5 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms