Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
NPAS1Q99742 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPAS1Q99742 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.83■□□□□ 0.93
NPAS1Q99742 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.83■□□□□ 0.93
NPAS1Q99742 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NPAS1Q99742 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPAS1Q99742 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NPAS1Q99742 TSPY9P-201ENST00000440215 945 ntBASIC20.83■□□□□ 0.93
NPAS1Q99742 TSPY11P-201ENST00000442607 1045 ntBASIC20.83■□□□□ 0.93
NPAS1Q99742 UNC93B8-201ENST00000511903 705 ntBASIC20.83■□□□□ 0.93
NPAS1Q99742 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NPAS1Q99742 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.83■□□□□ 0.92
NPAS1Q99742 ABCB10P4-201ENST00000566803 2184 ntBASIC20.83■□□□□ 0.92
NPAS1Q99742 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS1Q99742 AL022069.1-201ENST00000568025 1636 ntBASIC20.82■□□□□ 0.92
NPAS1Q99742 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS1Q99742 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
NPAS1Q99742 AC004448.1-201ENST00000458332 883 ntBASIC20.82■□□□□ 0.92
NPAS1Q99742 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS1Q99742 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
NPAS1Q99742 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.81■□□□□ 0.92
NPAS1Q99742 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.81■□□□□ 0.92
NPAS1Q99742 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.81■□□□□ 0.92
NPAS1Q99742 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.81■□□□□ 0.92
NPAS1Q99742 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS1Q99742 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.81■□□□□ 0.92
NPAS1Q99742 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.81■□□□□ 0.92
NPAS1Q99742 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.8■□□□□ 0.92
NPAS1Q99742 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.8■□□□□ 0.92
NPAS1Q99742 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
NPAS1Q99742 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.8■□□□□ 0.92
NPAS1Q99742 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.8■□□□□ 0.92
NPAS1Q99742 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS1Q99742 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NPAS1Q99742 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS1Q99742 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS1Q99742 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS1Q99742 AC141586.4-201ENST00000624558 1573 ntBASIC20.78■□□□□ 0.92
NPAS1Q99742 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS1Q99742 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.78■□□□□ 0.92
NPAS1Q99742 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.78■□□□□ 0.92
NPAS1Q99742 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS1Q99742 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS1Q99742 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.77■□□□□ 0.92
NPAS1Q99742 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.77■□□□□ 0.92
NPAS1Q99742 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.77■□□□□ 0.92
NPAS1Q99742 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS1Q99742 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
NPAS1Q99742 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPAS1Q99742 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPAS1Q99742 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPAS1Q99742 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.76■□□□□ 0.91
NPAS1Q99742 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
NPAS1Q99742 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.76■□□□□ 0.91
NPAS1Q99742 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.76■□□□□ 0.91
NPAS1Q99742 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS1Q99742 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
NPAS1Q99742 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS1Q99742 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.75■□□□□ 0.91
NPAS1Q99742 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.75■□□□□ 0.91
NPAS1Q99742 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.75■□□□□ 0.91
NPAS1Q99742 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPAS1Q99742 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NPAS1Q99742 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms