Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDX2Q99626 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CDX2Q99626 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CDX2Q99626 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDX2Q99626 MIR572-201ENST00000384983 95 ntBASIC24.5■■□□□ 1.51
CDX2Q99626 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.5■■□□□ 1.51
CDX2Q99626 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.5■■□□□ 1.51
CDX2Q99626 C17orf82-201ENST00000623772 1530 ntBASIC24.5■■□□□ 1.51
CDX2Q99626 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDX2Q99626 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDX2Q99626 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.49■■□□□ 1.51
CDX2Q99626 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDX2Q99626 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDX2Q99626 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CDX2Q99626 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.49■■□□□ 1.51
CDX2Q99626 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.49■■□□□ 1.51
CDX2Q99626 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.49■■□□□ 1.51
CDX2Q99626 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDX2Q99626 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.49■■□□□ 1.51
CDX2Q99626 LINC02228-203ENST00000641970 1355 ntBASIC24.49■■□□□ 1.51
CDX2Q99626 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CDX2Q99626 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDX2Q99626 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.48■■□□□ 1.51
CDX2Q99626 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
CDX2Q99626 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CDX2Q99626 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.48■■□□□ 1.51
CDX2Q99626 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
CDX2Q99626 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
CDX2Q99626 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.47■■□□□ 1.51
CDX2Q99626 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.47■■□□□ 1.51
CDX2Q99626 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC24.47■■□□□ 1.51
CDX2Q99626 DRD5P2-201ENST00000421395 2012 ntBASIC24.46■■□□□ 1.51
CDX2Q99626 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDX2Q99626 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.46■■□□□ 1.51
CDX2Q99626 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDX2Q99626 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.46■■□□□ 1.51
CDX2Q99626 AC009086.3-201ENST00000623486 1008 ntBASIC24.46■■□□□ 1.51
CDX2Q99626 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.46■■□□□ 1.51
CDX2Q99626 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDX2Q99626 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CDX2Q99626 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
CDX2Q99626 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.45■■□□□ 1.51
CDX2Q99626 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDX2Q99626 AC006970.2-201ENST00000450065 779 ntBASIC24.45■■□□□ 1.5
CDX2Q99626 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CDX2Q99626 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.45■■□□□ 1.5
CDX2Q99626 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.45■■□□□ 1.5
CDX2Q99626 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDX2Q99626 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.44■■□□□ 1.5
CDX2Q99626 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 AC016769.1-201ENST00000409132 1010 ntBASIC24.44■■□□□ 1.5
CDX2Q99626 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.44■■□□□ 1.5
CDX2Q99626 AL499627.2-201ENST00000606283 725 ntBASIC24.44■■□□□ 1.5
CDX2Q99626 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDX2Q99626 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.43■■□□□ 1.5
CDX2Q99626 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.43■■□□□ 1.5
CDX2Q99626 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.43■■□□□ 1.5
CDX2Q99626 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.43■■□□□ 1.5
CDX2Q99626 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CDX2Q99626 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.42■■□□□ 1.5
CDX2Q99626 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX2Q99626 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.42■■□□□ 1.5
CDX2Q99626 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX2Q99626 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.42■■□□□ 1.5
CDX2Q99626 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.42■■□□□ 1.5
CDX2Q99626 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDX2Q99626 IGHV3-19-201ENST00000521488 291 ntBASIC24.42■■□□□ 1.5
CDX2Q99626 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.42■■□□□ 1.5
CDX2Q99626 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDX2Q99626 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDX2Q99626 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDX2Q99626 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC24.41■■□□□ 1.5
CDX2Q99626 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC24.41■■□□□ 1.5
CDX2Q99626 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDX2Q99626 AC137761.2-201ENST00000561729 223 ntBASIC24.41■■□□□ 1.5
CDX2Q99626 AC145350.3-201ENST00000569033 163 ntBASIC24.41■■□□□ 1.5
CDX2Q99626 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDX2Q99626 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDX2Q99626 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDX2Q99626 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
CDX2Q99626 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.4■■□□□ 1.5
CDX2Q99626 CROCCP5-201ENST00000436658 830 ntBASIC24.4■■□□□ 1.5
CDX2Q99626 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDX2Q99626 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.4■■□□□ 1.5
CDX2Q99626 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CDX2Q99626 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CDX2Q99626 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDX2Q99626 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
CDX2Q99626 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
CDX2Q99626 NCF1B-203ENST00000435988 1254 ntBASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms