Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIM2P55344 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LIM2P55344 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIM2P55344 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIM2P55344 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LIM2P55344 MIR4787-201ENST00000607364 84 ntBASIC21.74■■□□□ 1.07
LIM2P55344 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIM2P55344 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
LIM2P55344 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIM2P55344 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIM2P55344 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
LIM2P55344 AC004448.1-201ENST00000458332 883 ntBASIC21.73■■□□□ 1.07
LIM2P55344 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
LIM2P55344 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIM2P55344 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIM2P55344 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIM2P55344 AC004812.2-201ENST00000611079 2094 ntBASIC21.73■■□□□ 1.07
LIM2P55344 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIM2P55344 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIM2P55344 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
LIM2P55344 SNX5-217ENST00000606557 1087 ntBASIC21.72■■□□□ 1.07
LIM2P55344 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIM2P55344 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIM2P55344 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.72■■□□□ 1.07
LIM2P55344 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.71■■□□□ 1.07
LIM2P55344 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIM2P55344 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIM2P55344 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.71■■□□□ 1.07
LIM2P55344 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.71■■□□□ 1.07
LIM2P55344 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.71■■□□□ 1.07
LIM2P55344 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIM2P55344 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.71■■□□□ 1.07
LIM2P55344 AC092028.1-203ENST00000608262 953 ntBASIC21.71■■□□□ 1.07
LIM2P55344 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.71■■□□□ 1.07
LIM2P55344 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIM2P55344 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIM2P55344 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
LIM2P55344 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.7■■□□□ 1.06
LIM2P55344 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.7■■□□□ 1.06
LIM2P55344 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LIM2P55344 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LIM2P55344 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIM2P55344 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.7■■□□□ 1.06
LIM2P55344 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.69■■□□□ 1.06
LIM2P55344 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.69■■□□□ 1.06
LIM2P55344 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.69■■□□□ 1.06
LIM2P55344 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIM2P55344 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIM2P55344 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIM2P55344 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIM2P55344 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.69■■□□□ 1.06
LIM2P55344 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.69■■□□□ 1.06
LIM2P55344 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.69■■□□□ 1.06
LIM2P55344 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LIM2P55344 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
LIM2P55344 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.69■■□□□ 1.06
LIM2P55344 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LIM2P55344 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.68■■□□□ 1.06
LIM2P55344 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.68■■□□□ 1.06
LIM2P55344 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.68■■□□□ 1.06
LIM2P55344 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIM2P55344 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.68■■□□□ 1.06
LIM2P55344 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIM2P55344 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.67■■□□□ 1.06
LIM2P55344 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.67■■□□□ 1.06
LIM2P55344 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIM2P55344 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LIM2P55344 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIM2P55344 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LIM2P55344 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.66■■□□□ 1.06
LIM2P55344 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.66■■□□□ 1.06
LIM2P55344 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LIM2P55344 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.66■■□□□ 1.06
LIM2P55344 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.66■■□□□ 1.06
LIM2P55344 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
LIM2P55344 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIM2P55344 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LIM2P55344 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
LIM2P55344 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIM2P55344 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms