Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTPN9P43378 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
PTPN9P43378 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.88■■□□□ 1.41
PTPN9P43378 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTPN9P43378 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.88■■□□□ 1.41
PTPN9P43378 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTPN9P43378 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTPN9P43378 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PTPN9P43378 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
PTPN9P43378 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.87■■□□□ 1.41
PTPN9P43378 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PTPN9P43378 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.87■■□□□ 1.41
PTPN9P43378 KRT125P-201ENST00000546827 989 ntBASIC23.87■■□□□ 1.41
PTPN9P43378 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
PTPN9P43378 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTPN9P43378 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTPN9P43378 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PTPN9P43378 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PTPN9P43378 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.86■■□□□ 1.41
PTPN9P43378 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PTPN9P43378 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PTPN9P43378 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
PTPN9P43378 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.85■■□□□ 1.41
PTPN9P43378 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTPN9P43378 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
PTPN9P43378 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PTPN9P43378 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTPN9P43378 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTPN9P43378 AC239859.2-201ENST00000444165 318 ntBASIC23.84■■□□□ 1.41
PTPN9P43378 AC092028.1-203ENST00000608262 953 ntBASIC23.84■■□□□ 1.41
PTPN9P43378 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
PTPN9P43378 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PTPN9P43378 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.84■■□□□ 1.41
PTPN9P43378 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTPN9P43378 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTPN9P43378 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.83■■□□□ 1.41
PTPN9P43378 MIR4787-201ENST00000607364 84 ntBASIC23.83■■□□□ 1.41
PTPN9P43378 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PTPN9P43378 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PTPN9P43378 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PTPN9P43378 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.82■■□□□ 1.4
PTPN9P43378 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.82■■□□□ 1.4
PTPN9P43378 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.82■■□□□ 1.4
PTPN9P43378 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.82■■□□□ 1.4
PTPN9P43378 AL035685.1-201ENST00000636663 812 ntBASIC23.82■■□□□ 1.4
PTPN9P43378 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.82■■□□□ 1.4
PTPN9P43378 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PTPN9P43378 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTPN9P43378 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTPN9P43378 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.81■■□□□ 1.4
PTPN9P43378 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.81■■□□□ 1.4
PTPN9P43378 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
PTPN9P43378 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PTPN9P43378 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTPN9P43378 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.81■■□□□ 1.4
PTPN9P43378 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTPN9P43378 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
PTPN9P43378 MIR6722-201ENST00000617286 78 ntBASIC23.81■■□□□ 1.4
PTPN9P43378 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.81■■□□□ 1.4
PTPN9P43378 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTPN9P43378 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTPN9P43378 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTPN9P43378 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.8■■□□□ 1.4
PTPN9P43378 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTPN9P43378 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTPN9P43378 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.8■■□□□ 1.4
PTPN9P43378 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.8■■□□□ 1.4
PTPN9P43378 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.8■■□□□ 1.4
PTPN9P43378 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
PTPN9P43378 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.79■■□□□ 1.4
PTPN9P43378 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.79■■□□□ 1.4
PTPN9P43378 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
PTPN9P43378 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
PTPN9P43378 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTPN9P43378 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTPN9P43378 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTPN9P43378 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
PTPN9P43378 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTPN9P43378 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.79■■□□□ 1.4
PTPN9P43378 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.78■■□□□ 1.4
PTPN9P43378 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTPN9P43378 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PTPN9P43378 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.78■■□□□ 1.4
PTPN9P43378 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms