Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 E2F3P2-201ENST00000447755 1422 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 BCYRN1-201ENST00000418539 200 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AKR7A2P1-201ENST00000460134 915 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC021723.1-201ENST00000486306 515 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC044849.1-201ENST00000519737 1188 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 DUX4L46-201ENST00000566845 751 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC132192.2-201ENST00000596206 1147 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AL451050.2-201ENST00000606967 682 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 BX088702.1-201ENST00000610784 235 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 AC006486.2-201ENST00000624246 2199 ntBASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLCF1Q9UBD9 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 NKAIN1P1-201ENST00000435754 582 ntBASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 TUBB8P8-201ENST00000458717 1058 ntBASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 AC100827.2-201ENST00000563214 1194 ntBASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.24□□□□□ -0.29
CLCF1Q9UBD9 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLCF1Q9UBD9 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms