Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 AP001063.1-201ENST00000568332 529 ntBASIC15.43■□□□□ 0.06
PCDH9Q9HC56 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.43■□□□□ 0.06
PCDH9Q9HC56 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.42■□□□□ 0.06
PCDH9Q9HC56 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 RN7SL837P-201ENST00000463010 287 ntBASIC15.42■□□□□ 0.06
PCDH9Q9HC56 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 AC010319.3-201ENST00000597028 470 ntBASIC15.42■□□□□ 0.06
PCDH9Q9HC56 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 CU639417.3-201ENST00000624240 1404 ntBASIC15.42■□□□□ 0.06
PCDH9Q9HC56 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PCDH9Q9HC56 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 RNU1-114P-201ENST00000365297 166 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 ACKR1-201ENST00000368121 1240 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 INE1-201ENST00000456273 945 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AC022616.1-201ENST00000518688 554 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.41■□□□□ 0.06
PCDH9Q9HC56 AC009486.1-201ENST00000569860 813 ntBASIC15.41■□□□□ 0.06
PCDH9Q9HC56 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms