Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
BRCA1P38398 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.47■□□□□ 0.39
BRCA1P38398 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC17.47■□□□□ 0.39
BRCA1P38398 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.47■□□□□ 0.39
BRCA1P38398 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 KRT18P62-201ENST00000446618 1287 ntBASIC17.47■□□□□ 0.39
BRCA1P38398 CDK4P1-201ENST00000454213 828 ntBASIC17.47■□□□□ 0.39
BRCA1P38398 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC17.47■□□□□ 0.39
BRCA1P38398 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.47■□□□□ 0.39
BRCA1P38398 RN7SL455P-201ENST00000580629 282 ntBASIC17.47■□□□□ 0.39
BRCA1P38398 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.47■□□□□ 0.39
BRCA1P38398 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.47■□□□□ 0.39
BRCA1P38398 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 CCT8L1P-201ENST00000465400 1674 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
BRCA1P38398 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
BRCA1P38398 OR7E115P-201ENST00000382617 1024 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 ABCD1P4-201ENST00000399687 604 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 AC092573.1-201ENST00000433054 884 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 AC053503.3-201ENST00000448375 114 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 RHOQP2-201ENST00000449922 579 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.46■□□□□ 0.39
BRCA1P38398 RN7SKP155-201ENST00000516031 288 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC17.46■□□□□ 0.39
BRCA1P38398 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
BRCA1P38398 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC17.46■□□□□ 0.39
BRCA1P38398 AL009176.1-201ENST00000607876 650 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 AC005746.3-201ENST00000614751 393 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
BRCA1P38398 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC17.46■□□□□ 0.39
BRCA1P38398 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.46■□□□□ 0.39
BRCA1P38398 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 AL050341.2-201ENST00000567508 1541 ntBASIC17.46■□□□□ 0.39
BRCA1P38398 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.46■□□□□ 0.39
BRCA1P38398 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
BRCA1P38398 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
BRCA1P38398 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.46■□□□□ 0.38
BRCA1P38398 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
BRCA1P38398 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
BRCA1P38398 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC17.46■□□□□ 0.38
BRCA1P38398 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
BRCA1P38398 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.46■□□□□ 0.38
BRCA1P38398 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC17.46■□□□□ 0.38
BRCA1P38398 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 AC020931.1-201ENST00000589622 1346 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
BRCA1P38398 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.45■□□□□ 0.38
BRCA1P38398 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 U73169.1-201ENST00000395152 367 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 NALT1-202ENST00000450304 437 ntTSL 3 BASIC17.45■□□□□ 0.38
BRCA1P38398 RN7SL351P-201ENST00000469306 248 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.45■□□□□ 0.38
BRCA1P38398 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.45■□□□□ 0.38
BRCA1P38398 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 AL359219.1-201ENST00000556311 934 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 AC139713.2-207ENST00000641556 1292 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 PCDHA1-201ENST00000378133 2726 ntBASIC17.45■□□□□ 0.38
BRCA1P38398 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
BRCA1P38398 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
BRCA1P38398 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.45■□□□□ 0.38
BRCA1P38398 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms