Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AC022137.2-201ENST00000503482 481 ntBASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AC093783.1-201ENST00000612976 329 ntBASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
VPS9D1Q9Y2B5 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 LINC00552-201ENST00000625151 2579 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 KRT8P35-201ENST00000483942 1338 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 MIR661-201ENST00000384842 89 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AC190387.1-201ENST00000551683 408 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TP53TG3HP-202ENST00000569755 579 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 AC113367.3-201ENST00000508316 1912 ntBASIC14.98□□□□□ -0.01
VPS9D1Q9Y2B5 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms