Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 FUCA1P1-201ENST00000374476 1351 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 PTGER4P2-201ENST00000328411 252 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 GNG10P1-201ENST00000452289 199 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 STK24P1-201ENST00000455035 1291 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 PTGER4P3-201ENST00000458150 252 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 SRP14-204ENST00000558720 780 ntTSL 2 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 RN7SL455P-201ENST00000580629 282 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 RN7SL556P-201ENST00000582856 298 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 AC104506.1-201ENST00000609247 429 ntBASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK3Q9BYB0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SHANK3Q9BYB0 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 KRT8P18-201ENST00000413425 1445 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 MSANTD2P1-201ENST00000445341 1368 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 SERBP1P2-201ENST00000436888 1164 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 ALG1L3P-201ENST00000503331 765 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 F11R-204ENST00000537746 1245 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 PEBP1P2-201ENST00000603980 558 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 AC013268.4-201ENST00000637413 2228 ntBASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK3Q9BYB0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 OR52M2P-201ENST00000414298 959 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AC010632.2-201ENST00000588369 1224 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AL627230.2-201ENST00000613254 655 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 BAX-205ENST00000391871 687 ntTSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 KRT18P37-201ENST00000520711 1282 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 VENTXP3-201ENST00000546480 773 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AC005586.2-201ENST00000563946 837 ntBASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.63■□□□□ 0.57
SHANK3Q9BYB0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK3Q9BYB0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms