Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC8.88□□□□□ -0.99
HSPG2P98160 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC8.88□□□□□ -0.99
HSPG2P98160 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 PDXDC2P-206ENST00000534700 1315 ntBASIC8.88□□□□□ -0.99
HSPG2P98160 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HSPG2P98160 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC8.87□□□□□ -0.99
HSPG2P98160 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 MIR611-201ENST00000384869 67 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 AL121949.1-201ENST00000402043 968 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 AC005722.1-201ENST00000431878 964 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC8.87□□□□□ -0.99
HSPG2P98160 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC8.87□□□□□ -0.99
HSPG2P98160 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 PCDHGB8P-201ENST00000502926 1973 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 KRT8P43-201ENST00000406052 1458 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 HNRNPA3P6-201ENST00000472163 1006 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 OR52V1P-201ENST00000515557 898 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 LAP3P2-201ENST00000454686 1454 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
HSPG2P98160 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
HSPG2P98160 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC8.87□□□□□ -0.99
HSPG2P98160 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC8.87□□□□□ -0.99
HSPG2P98160 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
HSPG2P98160 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC8.87□□□□□ -0.99
HSPG2P98160 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC8.87□□□□□ -0.99
HSPG2P98160 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC8.87□□□□□ -0.99
HSPG2P98160 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC8.87□□□□□ -0.99
HSPG2P98160 MARK2P17-201ENST00000498560 841 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 TPST2P1-201ENST00000564073 1102 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 MIR4265-201ENST00000582152 99 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC8.87□□□□□ -0.99
HSPG2P98160 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
HSPG2P98160 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
HSPG2P98160 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
HSPG2P98160 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC8.86□□□□□ -0.99
HSPG2P98160 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC8.86□□□□□ -0.99
HSPG2P98160 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
HSPG2P98160 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
HSPG2P98160 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC8.86□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms