Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
FOXA1P55317 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
FOXA1P55317 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
FOXA1P55317 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
FOXA1P55317 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 SPTLC1P1-201ENST00000447199 261 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 AC114812.1-204ENST00000449669 728 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 AC104596.2-201ENST00000512793 793 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
FOXA1P55317 RFPL4AP1-201ENST00000530883 850 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 AC092552.1-201ENST00000547243 906 ntBASIC14.48□□□□□ -0.09
FOXA1P55317 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.48□□□□□ -0.09
FOXA1P55317 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.48□□□□□ -0.09
FOXA1P55317 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
FOXA1P55317 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.48□□□□□ -0.09
FOXA1P55317 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.48□□□□□ -0.09
FOXA1P55317 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
FOXA1P55317 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
FOXA1P55317 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.47□□□□□ -0.09
FOXA1P55317 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.47□□□□□ -0.09
FOXA1P55317 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA1P55317 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.47□□□□□ -0.09
FOXA1P55317 AC123567.1-201ENST00000548294 1261 ntBASIC14.47□□□□□ -0.09
FOXA1P55317 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.47□□□□□ -0.09
FOXA1P55317 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 AC093726.1-201ENST00000608064 963 ntBASIC14.47□□□□□ -0.09
FOXA1P55317 AC005252.2-201ENST00000624630 1141 ntBASIC14.47□□□□□ -0.09
FOXA1P55317 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
FOXA1P55317 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 AC089987.1-201ENST00000551654 2209 ntBASIC14.47□□□□□ -0.09
FOXA1P55317 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
FOXA1P55317 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.47□□□□□ -0.09
FOXA1P55317 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
FOXA1P55317 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA1P55317 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms