Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.73□□□□□ -0.37
USF1P22415 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 AC004945.1-201ENST00000416738 983 ntBASIC12.73□□□□□ -0.37
USF1P22415 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 FNTAP2-201ENST00000430308 634 ntBASIC12.73□□□□□ -0.37
USF1P22415 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC12.73□□□□□ -0.37
USF1P22415 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.73□□□□□ -0.37
USF1P22415 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.73□□□□□ -0.37
USF1P22415 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 AC106872.11-201ENST00000605838 421 ntBASIC12.73□□□□□ -0.37
USF1P22415 AC244157.2-201ENST00000616239 1006 ntBASIC12.73□□□□□ -0.37
USF1P22415 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.73□□□□□ -0.37
USF1P22415 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
USF1P22415 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.73□□□□□ -0.37
USF1P22415 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
USF1P22415 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
USF1P22415 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
USF1P22415 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.72□□□□□ -0.37
USF1P22415 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.72□□□□□ -0.37
USF1P22415 MIR663B-201ENST00000408361 115 ntBASIC12.72□□□□□ -0.37
USF1P22415 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.72□□□□□ -0.37
USF1P22415 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.72□□□□□ -0.37
USF1P22415 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.72□□□□□ -0.37
USF1P22415 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.72□□□□□ -0.37
USF1P22415 AC005077.2-201ENST00000449786 690 ntBASIC12.72□□□□□ -0.37
USF1P22415 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.72□□□□□ -0.37
USF1P22415 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 COX5BP1-201ENST00000507622 393 ntBASIC12.72□□□□□ -0.37
USF1P22415 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
USF1P22415 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.72□□□□□ -0.37
USF1P22415 RHOQP1-201ENST00000555758 579 ntBASIC12.72□□□□□ -0.37
USF1P22415 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
USF1P22415 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms