Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VIMP08670 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VIMP08670 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.1■□□□□ 0.01
VIMP08670 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.1■□□□□ 0.01
VIMP08670 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 KRT19P2-202ENST00000557173 1012 ntBASIC15.1■□□□□ 0.01
VIMP08670 AC068137.2-201ENST00000605408 478 ntBASIC15.1■□□□□ 0.01
VIMP08670 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
VIMP08670 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 FAM215A-202ENST00000632077 792 ntBASIC15.1■□□□□ 0.01
VIMP08670 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 STRCP1-201ENST00000509801 5328 ntBASIC15.1■□□□□ 0.01
VIMP08670 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.09■□□□□ 0.01
VIMP08670 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 TCAM1P-207ENST00000485295 1537 ntBASIC15.09■□□□□ 0.01
VIMP08670 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.09■□□□□ 0.01
VIMP08670 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.09■□□□□ 0.01
VIMP08670 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.09■□□□□ 0.01
VIMP08670 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.09■□□□□ 0.01
VIMP08670 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.09■□□□□ 0.01
VIMP08670 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.09■□□□□ 0.01
VIMP08670 AC025181.2-201ENST00000606994 802 ntBASIC15.09■□□□□ 0.01
VIMP08670 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 AL773604.1-201ENST00000617417 272 ntBASIC15.09■□□□□ 0.01
VIMP08670 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.09■□□□□ 0.01
VIMP08670 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC15.09■□□□□ 0.01
VIMP08670 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
VIMP08670 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VIMP08670 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms