Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 AC009093.2-202ENST00000620513 2079 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 AL161772.1-201ENST00000610494 4412 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 AC004945.1-201ENST00000416738 983 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 GAPDHP21-201ENST00000450301 1010 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
NKX2-2O95096 AC103988.2-201ENST00000561804 725 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
NKX2-2O95096 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-2O95096 MYADML-201ENST00000474610 2147 ntBASIC13.76□□□□□ -0.21
NKX2-2O95096 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-2O95096 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-2O95096 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX2-2O95096 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX2-2O95096 AP000812.2-201ENST00000538934 718 ntBASIC13.75□□□□□ -0.21
NKX2-2O95096 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.75□□□□□ -0.21
NKX2-2O95096 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX2-2O95096 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.75□□□□□ -0.21
NKX2-2O95096 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.75□□□□□ -0.21
NKX2-2O95096 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
NKX2-2O95096 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
NKX2-2O95096 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
NKX2-2O95096 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
NKX2-2O95096 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
NKX2-2O95096 AL354989.2-201ENST00000435838 1540 ntBASIC13.74□□□□□ -0.21
NKX2-2O95096 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
NKX2-2O95096 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms