Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 AC007389.4-201ENST00000454674 793 ntBASIC15.97■□□□□ 0.15
SIX2Q9NPC8 ALG3P1-201ENST00000508806 1114 ntBASIC15.97■□□□□ 0.15
SIX2Q9NPC8 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 SLC25A47P1-201ENST00000531577 414 ntBASIC15.97■□□□□ 0.15
SIX2Q9NPC8 AC132938.2-201ENST00000579188 680 ntBASIC15.97■□□□□ 0.15
SIX2Q9NPC8 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 AL591163.1-201ENST00000641757 987 ntBASIC15.97■□□□□ 0.15
SIX2Q9NPC8 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 BCRP2-202ENST00000447763 634 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 RN7SL692P-201ENST00000464677 288 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 BCRP6-201ENST00000510112 632 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 BCRP7-201ENST00000511549 544 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 AL596325.1-201ENST00000563991 1082 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 AC244669.2-201ENST00000612320 853 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 IGHV3-72-202ENST00000621503 303 ntBASIC15.96■□□□□ 0.15
SIX2Q9NPC8 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SIX2Q9NPC8 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.96■□□□□ 0.14
SIX2Q9NPC8 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.95■□□□□ 0.14
SIX2Q9NPC8 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 AL355864.2-201ENST00000447420 863 ntBASIC15.95■□□□□ 0.14
SIX2Q9NPC8 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
SIX2Q9NPC8 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms