Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC099336.1-201ENST00000417053 1171 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MESTP3-201ENST00000503460 968 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 AC004466.1-201ENST00000599515 1080 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MIR6752-201ENST00000618442 71 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ACE3P-201ENST00000423435 1973 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 AC097376.2-205ENST00000610159 5334 ntBASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRIM39Q9HCM9 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 FAM45BP-202ENST00000592932 1624 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 MIR1202-201ENST00000408529 83 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 FAM8A4P-201ENST00000435433 1213 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 FTLP10-202ENST00000505798 471 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 AC138466.3-201ENST00000619983 221 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 CLUHP2-201ENST00000426660 1303 ntBASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM39Q9HCM9 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AL354989.2-201ENST00000435838 1540 ntBASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms