Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 KLF2P2-201ENST00000416807 1039 ntBASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AL583810.1-201ENST00000553344 1045 ntBASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 SBF1P1-201ENST00000444527 5631 ntBASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLIP3Q96DZ5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GRK6P1-201ENST00000400595 1711 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 FAM86MP-201ENST00000340703 885 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ACTBP8-201ENST00000403258 1108 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC026954.1-201ENST00000429771 1293 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC023310.1-201ENST00000554836 735 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC138951.2-201ENST00000623455 1161 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC011700.1-201ENST00000610409 2627 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 AC105250.1-201ENST00000509378 2057 ntBASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
CLIP3Q96DZ5 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms