Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 PMM2-216ENST00000569958 698 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 AP000354.1-201ENST00000396982 456 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 UGT1A12P-201ENST00000447084 853 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 EEF1GP8-201ENST00000506566 1154 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 AL359091.4-201ENST00000610052 409 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 RN7SL838P-201ENST00000481676 295 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 METTL7AP1-201ENST00000547343 496 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 RN7SL478P-201ENST00000584358 298 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CICP11-201ENST00000434745 2827 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 ZBED1P1-201ENST00000502364 1930 ntBASIC14.72□□□□□ -0.05
TTC28Q96AY4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.72□□□□□ -0.05
TTC28Q96AY4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
TTC28Q96AY4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AC133141.1-201ENST00000443015 339 ntBASIC14.71□□□□□ -0.05
TTC28Q96AY4 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.71□□□□□ -0.05
TTC28Q96AY4 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.71□□□□□ -0.05
TTC28Q96AY4 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.71□□□□□ -0.05
TTC28Q96AY4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TTC28Q96AY4 AC117503.4-201ENST00000623229 1418 ntBASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms