Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AC006504.5-208ENST00000588784 2401 ntBASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 AL928921.2-201ENST00000641325 2442 ntBASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 GRK6P1-201ENST00000400595 1711 ntBASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CLHC1Q8NHS4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 BASP1P1-201ENST00000430708 665 ntBASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 HSPA7-201ENST00000445535 1927 ntBASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLHC1Q8NHS4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 AL354702.1-201ENST00000442006 1960 ntBASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 PTENP1-202ENST00000532280 3996 ntBASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 SPDYE22P-201ENST00000582158 798 ntBASIC14.42□□□□□ -0.1
CLHC1Q8NHS4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms