Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC116Q8IYX3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 AC134312.5-201ENST00000568031 1313 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SBF1P1-201ENST00000444527 5631 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 FAM45BP-202ENST00000592932 1624 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 BAATP1-201ENST00000412284 1225 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SEC63P1-201ENST00000425785 1258 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ACTG1P3-201ENST00000431775 1114 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TDH-203ENST00000531764 1110 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 AC005912.2-201ENST00000619492 2400 ntBASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC116Q8IYX3 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 AC011495.1-201ENST00000498085 584 ntBASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 PTP4A1P2-201ENST00000546033 454 ntBASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC116Q8IYX3 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms