Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.82■□□□□ 0.44
COL4A1P02462 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 AC079112.1-201ENST00000454972 939 ntBASIC17.82■□□□□ 0.44
COL4A1P02462 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.82■□□□□ 0.44
COL4A1P02462 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.82■□□□□ 0.44
COL4A1P02462 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.82■□□□□ 0.44
COL4A1P02462 AL031713.1-201ENST00000564813 661 ntBASIC17.82■□□□□ 0.44
COL4A1P02462 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
COL4A1P02462 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.82■□□□□ 0.44
COL4A1P02462 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 MTHFR-210ENST00000641407 2387 ntBASIC17.82■□□□□ 0.44
COL4A1P02462 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL4A1P02462 AC126177.1-201ENST00000547829 2218 ntBASIC17.81■□□□□ 0.44
COL4A1P02462 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC17.81■□□□□ 0.44
COL4A1P02462 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A1P02462 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.81■□□□□ 0.44
COL4A1P02462 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 MIR5196-201ENST00000578146 115 ntBASIC17.81■□□□□ 0.44
COL4A1P02462 AC090386.2-201ENST00000623010 1039 ntBASIC17.81■□□□□ 0.44
COL4A1P02462 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
COL4A1P02462 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 API5-208ENST00000531273 1868 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.81■□□□□ 0.44
COL4A1P02462 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.81■□□□□ 0.44
COL4A1P02462 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 AC025271.4-201ENST00000621477 1726 ntBASIC17.81■□□□□ 0.44
COL4A1P02462 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A1P02462 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A1P02462 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL4A1P02462 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A1P02462 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL4A1P02462 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 CR383656.3-201ENST00000551315 183 ntBASIC17.8■□□□□ 0.44
COL4A1P02462 KRT8P1-201ENST00000557533 1207 ntBASIC17.8■□□□□ 0.44
COL4A1P02462 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC17.8■□□□□ 0.44
COL4A1P02462 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
COL4A1P02462 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
COL4A1P02462 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 AC023157.3-201ENST00000619086 2088 ntBASIC17.8■□□□□ 0.44
COL4A1P02462 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 AC018463.1-201ENST00000456674 917 ntBASIC17.8■□□□□ 0.44
COL4A1P02462 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A1P02462 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A1P02462 AP001184.1-201ENST00000637936 376 ntBASIC17.8■□□□□ 0.44
COL4A1P02462 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A1P02462 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms