Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 GAPDHP40-201ENST00000505218 1006 ntBASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 MIR6080-201ENST00000617359 66 ntBASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AC083964.2-201ENST00000623988 2396 ntBASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AL137783.1-201ENST00000623494 1896 ntBASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CCDC28BQ9BUN5 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 SPDYE7P-202ENST00000420373 878 ntBASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 PGAM5P1-201ENST00000518923 814 ntBASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC130686.1-201ENST00000622936 2466 ntBASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 AC020910.6-201ENST00000623084 1459 ntBASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC28BQ9BUN5 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 FDX1P1-201ENST00000449115 551 ntBASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms