Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TTC28Q96AY4 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TTC28Q96AY4 AL591122.2-201ENST00000624125 1853 ntBASIC14.74□□□□□ -0.05
TTC28Q96AY4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 WDR54-202ENST00000409791 854 ntTSL 3 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 RPL18AP16-201ENST00000424057 531 ntBASIC14.74□□□□□ -0.05
TTC28Q96AY4 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 RNF7-205ENST00000480908 782 ntTSL 4 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 LINC02199-201ENST00000506655 2702 ntBASIC14.74□□□□□ -0.05
TTC28Q96AY4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 KRT8P2-201ENST00000556193 944 ntBASIC14.74□□□□□ -0.05
TTC28Q96AY4 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 AGGF1P1-201ENST00000509500 2073 ntBASIC14.74□□□□□ -0.05
TTC28Q96AY4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
TTC28Q96AY4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.74□□□□□ -0.05
TTC28Q96AY4 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC019109.1-201ENST00000401725 1874 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC000078.1-201ENST00000420617 682 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 HNRNPA1P21-201ENST00000424115 961 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 RN7SL277P-201ENST00000481521 288 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 RN7SL564P-201ENST00000496309 250 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC132812.1-201ENST00000583145 892 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 PDLIM1P1-201ENST00000604187 969 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC007613.1-201ENST00000572811 2597 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC092127.1-201ENST00000567093 3455 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AL590440.2-201ENST00000641973 1595 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
TTC28Q96AY4 HNRNPA1P59-201ENST00000430583 918 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 KRT19P4-201ENST00000443208 943 ntBASIC14.73□□□□□ -0.05
TTC28Q96AY4 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC14.73□□□□□ -0.05
TTC28Q96AY4 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms