Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
ERCC4Q92889 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ERCC4Q92889 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.07■□□□□ 0.32
ERCC4Q92889 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ERCC4Q92889 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
ERCC4Q92889 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
ERCC4Q92889 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.06■□□□□ 0.32
ERCC4Q92889 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 IGHV3-42-201ENST00000520410 361 ntBASIC17.06■□□□□ 0.32
ERCC4Q92889 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.06■□□□□ 0.32
ERCC4Q92889 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.06■□□□□ 0.32
ERCC4Q92889 AC015911.4-201ENST00000588022 1070 ntBASIC17.06■□□□□ 0.32
ERCC4Q92889 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 AL158211.3-201ENST00000607385 239 ntBASIC17.06■□□□□ 0.32
ERCC4Q92889 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.06■□□□□ 0.32
ERCC4Q92889 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ERCC4Q92889 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ERCC4Q92889 AL354702.1-201ENST00000442006 1960 ntBASIC17.06■□□□□ 0.32
ERCC4Q92889 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC17.06■□□□□ 0.32
ERCC4Q92889 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC015802.1-201ENST00000588104 1449 ntBASIC17.05■□□□□ 0.32
ERCC4Q92889 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC4Q92889 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.05■□□□□ 0.32
ERCC4Q92889 ZNF890P-202ENST00000530367 1156 ntBASIC17.05■□□□□ 0.32
ERCC4Q92889 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC4Q92889 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 AL390754.1-201ENST00000619088 582 ntBASIC17.05■□□□□ 0.32
ERCC4Q92889 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ERCC4Q92889 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC4Q92889 AC012617.1-204ENST00000586340 2305 ntBASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms