Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 HMGB1P24-201ENST00000611897 328 ntBASIC19.9■□□□□ 0.78
NPHP3Q7Z494 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 TEKT4P2-202ENST00000559466 1312 ntBASIC19.9■□□□□ 0.78
NPHP3Q7Z494 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 AC006372.4-201ENST00000624122 1543 ntBASIC19.9■□□□□ 0.78
NPHP3Q7Z494 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP3Q7Z494 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
NPHP3Q7Z494 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.89■□□□□ 0.78
NPHP3Q7Z494 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.89■□□□□ 0.78
NPHP3Q7Z494 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 ST13P19-201ENST00000442505 1124 ntBASIC19.89■□□□□ 0.77
NPHP3Q7Z494 GNG10P1-201ENST00000452289 199 ntBASIC19.89■□□□□ 0.77
NPHP3Q7Z494 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.89■□□□□ 0.77
NPHP3Q7Z494 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 AC025183.3-201ENST00000623526 1482 ntBASIC19.89■□□□□ 0.77
NPHP3Q7Z494 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 LINC02199-201ENST00000506655 2702 ntBASIC19.89■□□□□ 0.77
NPHP3Q7Z494 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NPHP3Q7Z494 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AP005212.2-201ENST00000584979 510 ntBASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 MRPL37P1-201ENST00000592451 1337 ntBASIC19.88■□□□□ 0.77
NPHP3Q7Z494 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AP002353.1-201ENST00000528257 1599 ntBASIC19.88■□□□□ 0.77
NPHP3Q7Z494 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
NPHP3Q7Z494 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NPHP3Q7Z494 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms