Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 USP47-202ENST00000339865 7775 ntTSL 2 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 AL158211.3-201ENST00000607385 239 ntBASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 AL138828.2-201ENST00000615812 383 ntBASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PPP4R4Q6NUP7 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 RNA5SP421-201ENST00000516864 134 ntBASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PPP4R4Q6NUP7 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PPP4R4Q6NUP7 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.45□□□□□ -0.1
PPP4R4Q6NUP7 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms