Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC10.38□□□□□ -0.75
PRKDCP78527 RPL18AP15-201ENST00000430258 517 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 KRT18P62-201ENST00000446618 1287 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 AC007679.1-201ENST00000458609 502 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 MARK2P17-201ENST00000498560 841 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 PRSS3P1-201ENST00000503996 742 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 AC009041.4-201ENST00000620075 638 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 SALL4P5-201ENST00000419001 1760 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 HNRNPA1P21-201ENST00000424115 961 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 AC004910.1-201ENST00000433493 787 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 CA5BP1-205ENST00000435806 1064 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 AC002511.3-201ENST00000638098 420 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 FRMD6-AS1-201ENST00000617151 2229 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
PRKDCP78527 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC10.38□□□□□ -0.75
PRKDCP78527 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
PRKDCP78527 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC10.38□□□□□ -0.75
PRKDCP78527 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 AC105250.1-201ENST00000509378 2057 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC10.38□□□□□ -0.75
PRKDCP78527 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
PRKDCP78527 AC005332.8-201ENST00000622750 2735 ntBASIC10.38□□□□□ -0.75
PRKDCP78527 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 RPS5-205ENST00000598495 800 ntTSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 GRAMD4P6-201ENST00000556999 244 ntBASIC10.37□□□□□ -0.75
PRKDCP78527 RN7SL605P-201ENST00000577229 281 ntBASIC10.37□□□□□ -0.75
PRKDCP78527 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 STK33-217ENST00000534493 1895 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC10.37□□□□□ -0.75
PRKDCP78527 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
PRKDCP78527 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 AP000244.1-201ENST00000424582 201 ntBASIC10.37□□□□□ -0.75
PRKDCP78527 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 RBM14-205ENST00000443702 732 ntTSL 3 BASIC10.37□□□□□ -0.75
PRKDCP78527 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 RN7SL788P-201ENST00000460504 316 ntBASIC10.37□□□□□ -0.75
PRKDCP78527 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
PRKDCP78527 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC10.37□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms