Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VCPP55072 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.1■□□□□ 0.17
VCPP55072 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VCPP55072 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.1■□□□□ 0.17
VCPP55072 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.1■□□□□ 0.17
VCPP55072 RPSAP36-202ENST00000494591 1261 ntBASIC16.1■□□□□ 0.17
VCPP55072 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.1■□□□□ 0.17
VCPP55072 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.1■□□□□ 0.17
VCPP55072 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.1■□□□□ 0.17
VCPP55072 NDUFV2P1-201ENST00000596415 907 ntBASIC16.1■□□□□ 0.17
VCPP55072 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 AC091812.3-201ENST00000621362 345 ntBASIC16.1■□□□□ 0.17
VCPP55072 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VCPP55072 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
VCPP55072 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VCPP55072 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCPP55072 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
VCPP55072 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VCPP55072 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VCPP55072 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VCPP55072 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
VCPP55072 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.09■□□□□ 0.17
VCPP55072 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.09■□□□□ 0.17
VCPP55072 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.09■□□□□ 0.17
VCPP55072 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.09■□□□□ 0.17
VCPP55072 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 AC245884.6-201ENST00000515672 1067 ntBASIC16.09■□□□□ 0.17
VCPP55072 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.09■□□□□ 0.17
VCPP55072 AC015910.1-201ENST00000579400 975 ntBASIC16.09■□□□□ 0.17
VCPP55072 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 AL451050.2-201ENST00000606967 682 ntBASIC16.09■□□□□ 0.17
VCPP55072 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
VCPP55072 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VCPP55072 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 AL390755.1-201ENST00000623716 2027 ntBASIC16.09■□□□□ 0.17
VCPP55072 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
VCPP55072 AC018735.1-201ENST00000437208 1502 ntBASIC16.09■□□□□ 0.17
VCPP55072 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCPP55072 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCPP55072 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms